| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3078 | 94177 | C | A | 16 | 400.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3079 | 46008 | G | T | 13 | 97.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3082 | 6004 | C | G | 82 | 195.77 | CDS | Transversion | 0/1 | Plasma membrane ATPase (EC 3.6.3.6) (Proton pump) |
| Scaffold_3082 | 7191 | T | G | 30 | 347.77 | CDS | Transversion | 0/1 | Plasma membrane ATPase (EC 3.6.3.6) (Proton pump) |
| Scaffold_3084 | 47568 | G | C | 56 | 190.77 | noncoding | Transversion | 0/1 | Glutathione S-transferase U18 (AtGSTU18) (EC 2.5.1.18) (GST class-tau member 18) (Glutathione S-transferase 29) |
| Scaffold_3084 | 47569 | C | A | 82 | 953.77 | noncoding | Transversion | 0/1 | Glutathione S-transferase U18 (AtGSTU18) (EC 2.5.1.18) (GST class-tau member 18) (Glutathione S-transferase 29) |
| Scaffold_3092 | 65834 | A | T | 18 | 49.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3095 | 14128 | G | T | 17 | 31.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3095 | 14129 | T | G | 17 | 135.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3100 | 42823 | A | T | 21 | 190.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3100 | 42854 | G | C | 18 | 266.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3102 | 2401 | A | C | 13 | 282.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3102 | 2509 | G | T | 28 | 458.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3102 | 2537 | T | G | 39 | 781.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3102 | 2663 | A | C | 33 | 583.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3103 | 33064 | T | A | 33 | 615.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3104 | 42741 | C | G | 14 | 35.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3104 | 42744 | C | A | 22 | 245.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3108 | 21242 | T | A | 90 | 2265.77 | exon | Transversion | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 21311 | G | C | 198 | 1594.77 | exon | Transversion | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |