| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3108 | 21398 | A | T | 250 | 265.77 | exon | Transversion | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 21422 | C | A | 250 | 3587.77 | exon | Transversion | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 21653 | A | C | 37 | 150.77 | CDS | Transversion | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 22518 | G | C | 249 | 113.77 | CDS | Transversion | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 22590 | G | C | 108 | 1654.77 | CDS | Transversion | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 35867 | A | C | 25 | 481.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3115 | 11433 | T | A | 21 | 101.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3115 | 11517 | A | T | 27 | 691.94 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3115 | 12409 | T | A | 13 | 110.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3115 | 13539 | G | T | 11 | 207.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3115 | 13655 | C | A | 16 | 289.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3115 | 14484 | A | T | 16 | 399.03 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3115 | 15155 | G | C | 14 | 222.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3116 | 5940 | C | A | 10 | 173.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3120 | 41205 | A | T | 73 | 756.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3121 | 21360 | G | T | 20 | 362.77 | noncoding | Transversion | 0/1 | Protein ABCI12, chloroplastic (ABC transporter I family member 12) (ABC transporter ABCI.12) (AtABCI12) |
| Scaffold_3122 | 41265 | C | A | 28 | 359.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3124 | 59467 | C | G | 51 | 1217.82 | intron | Transversion | 0/1 | O-fucosyltransferase 39 (O-FucT-39) (EC 2.4.1.-) (O-fucosyltransferase family protein) |
| Scaffold_3128 | 77 | A | T | 159 | 763.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3128 | 90 | T | G | 250 | 4312.77 | CDS | Transversion | 0/1 | Unannotated |