| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3128 | 167 | T | A | 250 | 202.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3128 | 293 | T | A | 246 | 495.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3128 | 314 | C | G | 250 | 4673.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3128 | 371 | C | A | 250 | 5762.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3128 | 780 | C | G | 250 | 3973.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3128 | 873 | A | C | 103 | 1648.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3132 | 27246 | C | A | 97 | 191.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3132 | 27341 | A | T | 37 | 31.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3132 | 27363 | G | C | 65 | 55.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3132 | 27365 | T | A | 64 | 1137.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3135 | 43610 | G | T | 38 | 418.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3140 | 4351 | A | T | 123 | 3139.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3140 | 4808 | C | G | 47 | 122.77 | noncoding | Transversion | 0/1 | Pantothenate kinase 2 (AtPANK2) (EC 2.7.1.33) (Pantothenic acid kinase 2) |
| Scaffold_3140 | 4944 | G | T | 25 | 442.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3140 | 5422 | T | A | 108 | 1537.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3149 | 13693 | C | A | 10 | 128.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3149 | 14021 | G | C | 26 | 383.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3149 | 14041 | G | C | 35 | 469.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3149 | 14101 | G | T | 16 | 95.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3155 | 20181 | T | G | 21 | 56.77 | noncoding | Transversion | 0/1 | Unannotated |