| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3269 | 44098 | G | T | 52 | 471.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3274 | 45957 | G | C | 12 | 104.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3274 | 56714 | A | T | 249 | 455.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3274 | 56753 | C | G | 244 | 741.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3274 | 56950 | A | T | 153 | 1143.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3274 | 56968 | T | A | 216 | 3371.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3280 | 3853 | A | T | 10 | 179.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3280 | 3974 | A | C | 11 | 121.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3280 | 4398 | C | G | 17 | 84.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3280 | 6107 | C | G | 69 | 778.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3280 | 15248 | A | C | 121 | 44.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3280 | 15250 | G | C | 250 | 90.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3298 | 2066 | G | T | 17 | 327.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3301 | 35565 | C | A | 60 | 1152.77 | CDS | Transversion | 0/1 | Cellulose synthase-like protein B4 (AtCslB4) (EC 2.4.1.-) |
| Scaffold_3301 | 36257 | T | A | 170 | 180.77 | intron | Transversion | 0/1 | Cellulose synthase-like protein B4 (AtCslB4) (EC 2.4.1.-) |
| Scaffold_3305 | 20327 | A | C | 88 | 456.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3308 | 19007 | T | G | 11 | 223.56 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3312 | 8989 | G | T | 232 | 3404.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3315 | 35124 | G | T | 59 | 246.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3315 | 35171 | T | A | 148 | 2098.77 | noncoding | Transversion | 0/1 | Unannotated |