| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2 | 1099509 | G | T | 19 | 81.77 | exon | Transversion | 0/1 | LRR receptor-like serine/threonine-protein kinase (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase At4g26540) (Protein RECEPTOR OF RGF1) (Protein RGF1 INSENSITIVE 3) |
| Scaffold_2 | 1104836 | T | G | 211 | 5334.77 | CDS | Transversion | 0/1 | LRR receptor-like serine/threonine-protein kinase (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase At4g26540) (Protein RECEPTOR OF RGF1) (Protein RGF1 INSENSITIVE 3) |
| Scaffold_2 | 1105394 | G | C | 109 | 2602.77 | CDS | Transversion | 0/1 | Probable LRR receptor-like serine/threonine-protein kinase At4g36180 (EC 2.7.11.1) |
| Scaffold_2 | 1140529 | A | C | 25 | 85.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 2117901 | T | G | 11 | 99.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 2117903 | A | T | 10 | 38.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 2305054 | C | A | 25 | 516.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 2305065 | G | T | 27 | 535.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 2305243 | A | T | 57 | 148.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 2305465 | A | C | 18 | 68.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 2338291 | A | C | 10 | 173.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 2341429 | G | C | 25 | 135.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 2571271 | A | C | 48 | 814.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 2571272 | A | C | 29 | 223.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 2572163 | G | C | 22 | 466.18 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 2702394 | A | C | 29 | 473.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 2733135 | G | C | 42 | 182.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_4 | 354459 | G | T | 11 | 200.84 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_4 | 374467 | G | T | 38 | 234.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_4 | 1066315 | A | C | 63 | 355.77 | noncoding | Transversion | 0/1 | Unannotated |