| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3516 | 55442 | A | C | 11 | 104.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 55534 | G | T | 80 | 1728.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 56174 | G | C | 107 | 2139.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 56200 | T | A | 250 | 957.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 56359 | G | T | 12 | 89.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 57226 | A | T | 12 | 212.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 57356 | C | G | 85 | 1346.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 57410 | A | C | 31 | 640.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 57557 | A | C | 47 | 459.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 57816 | G | C | 108 | 43.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 57951 | G | T | 156 | 320.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 58025 | A | C | 98 | 1546.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 58034 | A | T | 94 | 1048.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 58207 | A | T | 33 | 180.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 58250 | A | C | 17 | 248.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 68329 | A | C | 118 | 216.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3516 | 68344 | T | A | 125 | 913.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3527 | 24369 | C | G | 13 | 56.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3528 | 2527 | G | T | 32 | 343.77 | noncoding | Transversion | 0/1 | ABC transporter C family member 8 (ABC transporter ABCC.8) (AtABCC8) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 6) (Glutathione S-conjugate-transporting ATPase 6) (Multidrug resistance-associated protein 6) |
| Scaffold_3532 | 30344 | T | A | 15 | 95.77 | intron | Transversion | 0/1 | Unannotated |