| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3585 | 46886 | A | C | 250 | 2870.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3585 | 46917 | C | G | 250 | 1052.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3585 | 46945 | T | G | 249 | 231.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3585 | 47027 | A | T | 206 | 823.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3585 | 47080 | T | G | 102 | 198.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3589 | 17084 | C | A | 21 | 438.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3589 | 17275 | G | T | 37 | 454.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3589 | 17378 | C | G | 32 | 489.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3589 | 31330 | A | T | 19 | 495.88 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3593 | 65431 | C | G | 13 | 197.77 | exon | Transversion | 0/1 | Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1 (EC 2.3.1.-) |
| Scaffold_3598 | 46944 | C | A | 14 | 105.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3598 | 46945 | T | G | 14 | 130.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3602 | 41813 | G | T | 10 | 227.22 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3603 | 15988 | A | C | 150 | 2568.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3620 | 16500 | G | C | 12 | 36.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3622 | 5225 | C | A | 12 | 88.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3624 | 40049 | A | T | 138 | 37.82 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3624 | 53465 | T | G | 13 | 158.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3627 | 32561 | A | C | 16 | 113.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3635 | 18012 | A | T | 30 | 132.77 | CDS | Transversion | 0/1 | CLIP-associated protein (AtCLASP) |