| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3693 | 48062 | T | A | 107 | 1896.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3693 | 48126 | T | A | 107 | 621.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3693 | 48153 | A | T | 71 | 779.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3695 | 41205 | A | C | 23 | 120.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3695 | 41350 | A | T | 67 | 40.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3695 | 42550 | T | A | 14 | 87.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3700 | 13606 | G | C | 17 | 108.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3700 | 14451 | G | C | 25 | 93.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3700 | 14458 | C | A | 27 | 252.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3700 | 14489 | T | A | 28 | 196.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3700 | 32849 | A | C | 247 | 3129.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3706 | 1574 | C | G | 28 | 101.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3708 | 21779 | A | T | 24 | 592.77 | intron | Transversion | 0/1 | Ferredoxin-dependent glutamate synthase, chloroplastic (EC 1.4.7.1) (Fd-GOGAT) |
| Scaffold_3711 | 46090 | A | T | 244 | 159.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3719 | 2632 | T | G | 22 | 71.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3719 | 2641 | T | A | 22 | 110.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3719 | 2757 | A | C | 31 | 613.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3722 | 57235 | G | C | 49 | 1038.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3724 | 68734 | T | A | 200 | 3743.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3724 | 68954 | A | T | 50 | 679.77 | CDS | Transversion | 0/1 | Unannotated |