| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3724 | 69573 | A | T | 140 | 603.77 | CDS | Transversion | 0/1 | Protein tesmin/TSO1-like CXC 2 (AtTCX2) (Protein TSO1-like 2) (Protein SOL2) |
| Scaffold_3724 | 69734 | G | T | 204 | 711.77 | CDS | Transversion | 0/1 | Protein tesmin/TSO1-like CXC 2 (AtTCX2) (Protein TSO1-like 2) (Protein SOL2) |
| Scaffold_3725 | 55440 | T | A | 24 | 437.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3725 | 55630 | T | G | 12 | 143.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3728 | 50205 | T | G | 78 | 885.9 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3730 | 31235 | A | C | 16 | 127.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3730 | 31236 | C | A | 21 | 122.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3730 | 31345 | C | A | 75 | 138.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3730 | 31346 | C | A | 31 | 130.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3733 | 43924 | G | C | 71 | 780.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3733 | 44002 | C | G | 105 | 194.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3733 | 44225 | T | A | 23 | 63.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3733 | 44297 | T | G | 47 | 366.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3733 | 45317 | A | C | 10 | 189.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3740 | 19724 | T | G | 11 | 287.96 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3740 | 41327 | A | C | 69 | 1376.77 | noncoding | Transversion | 0/1 | Uncharacterized protein At1g01500 |
| Scaffold_3740 | 41353 | T | G | 122 | 2662.77 | noncoding | Transversion | 0/1 | Uncharacterized protein At1g01500 |
| Scaffold_3740 | 41999 | C | A | 20 | 265.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3740 | 42052 | C | A | 87 | 129.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3740 | 42071 | G | T | 97 | 1677.77 | noncoding | Transversion | 0/1 | Unannotated |