| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3758 | 41634 | G | T | 17 | 75.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3758 | 41653 | A | C | 29 | 40.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3758 | 41767 | T | G | 249 | 6698.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3758 | 41871 | C | A | 16 | 402.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3758 | 41889 | A | C | 22 | 484.78 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3763 | 3580 | C | G | 249 | 3233.06 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3763 | 3709 | C | G | 233 | 5098.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3763 | 3787 | A | T | 29 | 255.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3763 | 3829 | T | G | 28 | 196.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3763 | 40180 | A | T | 81 | 192.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3770 | 57233 | A | T | 29 | 65.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3771 | 12519 | T | G | 36 | 286.77 | CDS | Transversion | 0/1 | Probable LRR receptor-like serine/threonine-protein kinase At2g16250 (EC 2.7.11.1) |
| Scaffold_3771 | 12577 | C | A | 50 | 217.77 | CDS | Transversion | 0/1 | Probable LRR receptor-like serine/threonine-protein kinase At2g16250 (EC 2.7.11.1) |
| Scaffold_3771 | 12929 | G | T | 66 | 894.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3771 | 13488 | A | T | 12 | 137.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3771 | 13494 | A | C | 11 | 82.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3777 | 2630 | A | C | 11 | 85.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3779 | 24979 | G | C | 12 | 303.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3783 | 20421 | T | G | 70 | 503.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3789 | 20870 | G | C | 24 | 156.77 | CDS | Transversion | 0/1 | Unannotated |