| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3808 | 27394 | A | T | 14 | 333.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3808 | 27438 | G | C | 24 | 560.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3808 | 27457 | C | A | 26 | 624.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3809 | 4582 | C | A | 15 | 58.77 | noncoding | Transversion | 0/1 | Transcriptional corepressor LEUNIG_HOMOLOG (Protein MUCILAGE-MODIFIED 1) |
| Scaffold_3810 | 783 | G | C | 65 | 316.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3810 | 847 | A | T | 20 | 299.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3810 | 53460 | T | G | 163 | 88.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3811 | 47948 | T | G | 117 | 38.77 | exon | Transversion | 0/1 | Fasciclin-like arabinogalactan protein 16 |
| Scaffold_3811 | 56862 | T | A | 15 | 87.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3811 | 56863 | C | A | 13 | 36.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3811 | 56925 | T | G | 64 | 283.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3811 | 58257 | T | A | 43 | 35.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3811 | 58382 | C | G | 11 | 235.31 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3814 | 36626 | A | T | 10 | 53.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3822 | 1222 | C | G | 75 | 91.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3822 | 1257 | C | G | 81 | 434.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3822 | 1370 | C | G | 131 | 138.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3822 | 1438 | A | T | 16 | 184.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3832 | 31543 | T | A | 13 | 200.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3834 | 31156 | C | A | 11 | 88.77 | noncoding | Transversion | 0/1 | Unannotated |