| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3850 | 16709 | A | C | 11 | 138.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3850 | 16712 | C | A | 17 | 249.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3850 | 19376 | T | A | 54 | 572.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3856 | 70047 | T | A | 15 | 225.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3860 | 16461 | G | C | 25 | 430.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3860 | 16462 | C | A | 27 | 524.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3860 | 59860 | A | T | 15 | 108.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3862 | 7581 | T | G | 41 | 886.77 | exon | Transversion | 0/1 | SUMO-conjugating enzyme UBC9 (EC 2.3.2.-) (RING-type E3 SUMO transferase UBC9) (UBCAT4B) (Ubiquitin carrier protein 9) (Ubiquitin-conjugating enzyme E2 9) (Ubiquitin-conjugating enzyme E2-17 kDa) (Ubiquitin-protein ligase 9) |
| Scaffold_3862 | 35294 | G | C | 71 | 224.77 | CDS | Transversion | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) (p82) |
| Scaffold_3866 | 55794 | A | C | 47 | 492.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3871 | 33253 | C | A | 23 | 420.77 | noncoding | Transversion | 0/1 | Plastidial pyruvate kinase 4, chloroplastic (PKp4) (EC 2.7.1.40) |
| Scaffold_3871 | 44451 | G | C | 132 | 80.77 | exon | Transversion | 0/1 | Osmotin-like protein OSM34 |
| Scaffold_3873 | 47893 | T | A | 33 | 742.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3873 | 47919 | A | C | 31 | 86.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3873 | 47966 | G | C | 21 | 156.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3873 | 48071 | T | A | 42 | 396.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3873 | 48123 | T | G | 29 | 124.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3873 | 49149 | A | T | 27 | 479.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3877 | 40047 | T | G | 227 | 1413.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3881 | 54296 | A | T | 31 | 212.77 | CDS | Transversion | 0/1 | Unannotated |