| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3890 | 27284 | T | G | 42 | 615.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3890 | 27285 | A | T | 19 | 171.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3893 | 3665 | A | C | 203 | 137.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3893 | 3738 | C | A | 229 | 1206.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3893 | 3773 | G | C | 83 | 254.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3894 | 20905 | T | A | 24 | 343.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3894 | 20906 | G | T | 25 | 311.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3894 | 33762 | T | A | 243 | 1575.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3895 | 50854 | C | A | 13 | 159.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3902 | 16565 | T | A | 13 | 193.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3902 | 16566 | A | T | 10 | 77.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3903 | 26792 | C | A | 11 | 49.77 | noncoding | Transversion | 0/1 | Probable LRR receptor-like protein kinase At1g51890 (EC 2.7.11.1) |
| Scaffold_3903 | 26793 | A | T | 11 | 84.77 | noncoding | Transversion | 0/1 | Probable LRR receptor-like protein kinase At1g51890 (EC 2.7.11.1) |
| Scaffold_3905 | 43781 | G | C | 97 | 1005.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3905 | 43802 | A | C | 159 | 2497.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3905 | 43922 | A | T | 156 | 2155.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3905 | 44006 | A | C | 10 | 172.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3905 | 45221 | A | C | 87 | 575.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3915 | 70007 | A | C | 36 | 395.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3920 | 4655 | A | C | 250 | 300.77 | noncoding | Transversion | 0/1 | Unannotated |