| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2 | 500950 | T | C | 33 | 46.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2 | 517065 | A | G | 24 | 74.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2 | 719978 | C | T | 11 | 207.8 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2 | 719979 | A | G | 10 | 197.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2 | 852350 | G | A | 28 | 410.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2 | 959897 | C | T | 23 | 70.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2 | 973750 | T | C | 15 | 65.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2 | 1028848 | T | C | 250 | 388.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2 | 1029040 | A | G | 250 | 160.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2 | 1029067 | A | G | 250 | 62.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2 | 1029083 | T | C | 250 | 129.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2 | 1029125 | T | C | 250 | 667.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2 | 1029869 | A | G | 60 | 1314.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2 | 1030029 | T | C | 249 | 367.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2 | 1030466 | A | G | 250 | 116.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2 | 1030892 | G | A | 55 | 417.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2 | 1099364 | G | A | 171 | 4554.77 | exon | Transition | 0/1 | Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 |
| Scaffold_2 | 1099488 | G | A | 71 | 1807.77 | exon | Transition | 0/1 | LRR receptor-like serine/threonine-protein kinase (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase At4g26540) (Protein RECEPTOR OF RGF1) (Protein RGF1 INSENSITIVE 3) |
| Scaffold_2 | 1099975 | T | C | 19 | 33.77 | exon | Transition | 0/1 | LRR receptor-like serine/threonine-protein kinase (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase At4g26540) (Protein RECEPTOR OF RGF1) (Protein RGF1 INSENSITIVE 3) |
| Scaffold_2 | 1100203 | A | G | 19 | 261.41 | exon | Transition | 0/1 | LRR receptor-like serine/threonine-protein kinase (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase At4g26540) (Protein RECEPTOR OF RGF1) (Protein RGF1 INSENSITIVE 3) |