| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2 | 1104334 | C | T | 23 | 535.85 | CDS | Transition | 0/1 | LRR receptor-like serine/threonine-protein kinase (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase At4g26540) (Protein RECEPTOR OF RGF1) (Protein RGF1 INSENSITIVE 3) |
| Scaffold_2 | 1104340 | C | T | 22 | 531.74 | CDS | Transition | 0/1 | LRR receptor-like serine/threonine-protein kinase (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase At4g26540) (Protein RECEPTOR OF RGF1) (Protein RGF1 INSENSITIVE 3) |
| Scaffold_2 | 1105319 | C | T | 202 | 4376.77 | CDS | Transition | 0/1 | MDIS1-interacting receptor like kinase 2 (AtMIK2) (Probable LRR receptor-like serine/threonine-protein kinase At4g08850) (EC 2.7.11.1) |
| Scaffold_2 | 1105395 | G | A | 103 | 2495.77 | CDS | Transition | 0/1 | Probable LRR receptor-like serine/threonine-protein kinase At4g36180 (EC 2.7.11.1) |
| Scaffold_2 | 1196287 | A | G | 27 | 87.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2 | 1369994 | A | G | 22 | 266.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2 | 1370009 | C | T | 31 | 581.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2 | 1501114 | T | C | 12 | 37.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2 | 1827632 | G | A | 59 | 110.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2 | 1879980 | G | A | 44 | 108.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2 | 2119980 | A | G | 18 | 42.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2 | 2304680 | A | G | 35 | 67.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2 | 2304932 | A | G | 15 | 254.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2 | 2305164 | G | A | 42 | 101.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2 | 2305891 | T | C | 12 | 193.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2 | 2308820 | A | G | 103 | 93.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2 | 2336722 | A | G | 117 | 701.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2 | 2338015 | T | C | 141 | 1023.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2 | 2339151 | A | G | 74 | 377.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2 | 2341434 | G | A | 29 | 118.77 | CDS | Transition | 0/1 | Unannotated |