| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_5 | 915271 | G | A | 250 | 2478.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_5 | 915391 | A | G | 250 | 159.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_5 | 915475 | G | A | 249 | 3137.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_5 | 915528 | T | C | 124 | 259.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_5 | 915529 | T | C | 110 | 224.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_5 | 916653 | C | T | 250 | 307.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_5 | 916699 | A | G | 250 | 2317.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_5 | 916759 | T | C | 250 | 3313.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_5 | 1147316 | T | C | 196 | 473.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_5 | 1160032 | A | G | 51 | 30.77 | CDS | Transition | 0/1 | Protein INVOLVED IN DE NOVO 2 (Protein RNA-DIRECTED DNA METHYLATION 12) |
| Scaffold_5 | 1211277 | T | A,G | 11 | 619.77 | exon | Transition | 1/2 | Unannotated |
| Scaffold_5 | 1410229 | G | A | 31 | 535.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_5 | 1410318 | G | A | 68 | 592.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_5 | 1410465 | C | T | 110 | 1167.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_5 | 1410473 | T | C | 105 | 992.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_5 | 1410599 | T | C | 87 | 483.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_5 | 1485906 | A | G | 33 | 840.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_5 | 1500894 | C | T | 10 | 122.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_5 | 1506515 | T | C | 65 | 362.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_5 | 1506791 | A | G | 14 | 55.77 | exon | Transition | 0/1 | Unannotated |