| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_16 | 1437528 | G | C | 16 | 323.89 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_16 | 1442987 | T | G | 31 | 578.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_16 | 1447025 | G | C | 20 | 270.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_16 | 1514483 | A | T | 75 | 864.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_16 | 1514588 | G | T | 52 | 529.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_16 | 1514589 | C | G | 33 | 200.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_16 | 1514973 | A | T | 54 | 58.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_16 | 1515047 | G | C | 98 | 393.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_16 | 1515531 | A | T | 250 | 1139.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_16 | 1604873 | A | T | 113 | 1418.77 | CDS | Transversion | 0/1 | 2-hydroxyisoflavanone dehydratase (EC 3.1.1.1) (EC 4.2.1.105) (Carboxylesterase HIDM) |
| Scaffold_16 | 1653833 | G | C | 34 | 442.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_16 | 1828853 | A | T | 166 | 270.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_16 | 1952923 | A | C | 14 | 48.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_16 | 1954155 | A | T | 27 | 413.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_16 | 1954156 | C | G | 20 | 160.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_17 | 45751 | A | T | 15 | 272.9 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_17 | 45847 | T | A | 45 | 113.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_17 | 142583 | G | T | 69 | 880.77 | exon | Transversion | 0/1 | Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4) |
| Scaffold_17 | 293446 | A | T | 10 | 188.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_17 | 647492 | T | A | 67 | 517.77 | CDS | Transversion | 0/1 | Unannotated |