| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_10 | 1784092 | C | T | 52 | 183.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_10 | 1784097 | A | G | 52 | 366.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_10 | 1784220 | C | T | 110 | 1766.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_10 | 1784255 | T | C | 69 | 752.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_10 | 1784283 | A | G | 83 | 885.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_10 | 1784367 | G | A | 70 | 1433.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_10 | 1784397 | T | C | 57 | 1110.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_10 | 1784433 | G | A | 30 | 463.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_10 | 1820308 | G | A | 43 | 679.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_10 | 1820467 | C | T | 12 | 44.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_10 | 1820670 | C | T | 25 | 226.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_10 | 2026158 | C | T | 14 | 236.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_11 | 448493 | T | C | 16 | 34.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_11 | 484903 | T | C | 13 | 126.22 | intron | Transition | 0/1 | Unannotated |
| Scaffold_11 | 612639 | A | G | 31 | 34.77 | intron | Transition | 0/1 | Magnesium-chelatase subunit ChlH, chloroplastic (Mg-chelatase subunit H) (EC 6.6.1.1) (ABA-binding protein) (Mg-protoporphyrin IX chelatase subunit ChlH) (Protein CONDITIONAL CHLORINA) (Protein GENOMES UNCOUPLED 5) (Protein RAPID TRANSPIRATION IN DETACHED |
| Scaffold_11 | 614619 | C | A,G | 13 | 442.77 | CDS | Transition | 1/2 | Magnesium-chelatase subunit ChlH, chloroplastic (Mg-chelatase subunit H) (EC 6.6.1.1) (ABA-binding protein) (Mg-protoporphyrin IX chelatase subunit ChlH) (Protein CONDITIONAL CHLORINA) (Protein GENOMES UNCOUPLED 5) (Protein RAPID TRANSPIRATION IN DETACHED |
| Scaffold_11 | 674849 | C | T | 10 | 88.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_11 | 677369 | A | G | 250 | 146.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_11 | 690130 | G | A | 60 | 797.77 | CDS | Transition | 0/1 | Chalcone synthase 1 (EC 2.3.1.74) (Naringenin-chalcone synthase 1) |
| Scaffold_11 | 690178 | A | G | 26 | 429.77 | CDS | Transition | 0/1 | Chalcone synthase 1 (EC 2.3.1.74) (Naringenin-chalcone synthase 1) |