| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_11 | 690283 | C | T | 15 | 37.77 | CDS | Transition | 0/1 | Chalcone synthase 1 (EC 2.3.1.74) (Naringenin-chalcone synthase 1) |
| Scaffold_11 | 690299 | C | T | 21 | 275.77 | CDS | Transition | 0/1 | Chalcone synthase 1 (EC 2.3.1.74) (Naringenin-chalcone synthase 1) |
| Scaffold_11 | 756995 | C | T | 63 | 38.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_11 | 806498 | T | C | 29 | 671.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_11 | 931607 | G | A | 10 | 53.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_11 | 970030 | A | G | 13 | 258.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_11 | 970100 | C | T | 26 | 478.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_11 | 1055195 | C | T | 24 | 233.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_11 | 1055196 | T | C | 24 | 194.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_11 | 1128354 | A | G | 250 | 513.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_11 | 1129412 | C | T | 14 | 212.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_11 | 1342673 | T | C | 11 | 106.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_11 | 1715547 | G | A | 17 | 130.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_11 | 1812924 | T | C | 13 | 213.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_11 | 1812941 | G | A | 19 | 62.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_11 | 2114288 | T | C | 15 | 206.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_11 | 2221326 | T | C | 33 | 36.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_12 | 126561 | A | G | 20 | 78.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_12 | 356781 | A | G | 163 | 1934.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_12 | 356961 | G | A | 221 | 2747.77 | exon | Transition | 0/1 | Unannotated |