| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_12 | 356993 | G | A | 208 | 2161.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_12 | 357081 | A | G | 121 | 1115.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_12 | 357111 | G | A | 86 | 324.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_12 | 357145 | C | T | 107 | 925.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_12 | 478708 | A | G | 13 | 86.77 | intron | Transition | 0/1 | Elongation factor G-1, chloroplastic (cEF-G 1) |
| Scaffold_12 | 607842 | C | T | 56 | 1119.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_12 | 608046 | T | C | 35 | 874.78 | intron | Transition | 0/1 | Unannotated |
| Scaffold_12 | 721692 | T | C | 34 | 459.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_12 | 722337 | A | G | 75 | 1063.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_12 | 807087 | A | G | 12 | 54.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_12 | 817684 | C | T | 10 | 229.84 | exon | Transition | 0/1 | Unannotated |
| Scaffold_12 | 817763 | T | C | 10 | 175.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_12 | 820521 | A | G | 17 | 167.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_12 | 850176 | C | T | 29 | 241.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_12 | 1405027 | G | A | 11 | 171.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_12 | 1771210 | A | G | 15 | 95.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2421903 | A | G | 46 | 34.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2475638 | G | A | 18 | 94.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2475674 | G | A | 13 | 264.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_12 | 2628557 | T | C | 250 | 2507.77 | CDS | Transition | 0/1 | Unannotated |