| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_16 | 544192 | T | C | 16 | 282.03 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_16 | 545101 | G | A | 17 | 30.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_16 | 838379 | A | G | 14 | 131.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_16 | 862439 | A | G | 49 | 73.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_16 | 1136640 | T | C | 11 | 70.77 | noncoding | Transition | 0/1 | Flavonol 7-O-beta-glucosyltransferase UGT74F1 (EC 2.4.1.237) (UDP-glycosyltransferase 74F1) |
| Scaffold_16 | 1276960 | A | G | 250 | 398.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_16 | 1278104 | T | C | 43 | 143.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_16 | 1278371 | T | C | 19 | 169.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_16 | 1514484 | C | T | 102 | 1548.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_16 | 1515528 | C | T | 246 | 4396.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_16 | 1558079 | A | G | 46 | 313.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_16 | 1600513 | G | A | 61 | 231.77 | CDS | Transition | 0/1 | 2-hydroxyisoflavanone dehydratase (EC 3.1.1.1) (EC 4.2.1.105) (Carboxylesterase HIDM) |
| Scaffold_16 | 1600657 | A | G | 18 | 338.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_16 | 1604069 | C | T | 45 | 548.77 | exon | Transition | 0/1 | 2-hydroxyisoflavanone dehydratase (EC 3.1.1.1) (EC 4.2.1.105) (Carboxylesterase HIDM) |
| Scaffold_16 | 1604637 | A | G | 67 | 457.77 | CDS | Transition | 0/1 | 2-hydroxyisoflavanone dehydratase (EC 3.1.1.1) (EC 4.2.1.105) (Carboxylesterase HIDM) |
| Scaffold_16 | 1743695 | T | C | 74 | 42.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_16 | 1842400 | C | T | 30 | 99.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_16 | 2060064 | A | G | 12 | 135.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_17 | 14942 | T | C | 13 | 56.77 | exon | Transition | 0/1 | Serine/threonine-protein kinase BRI1-like 1 (EC 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 1) |
| Scaffold_17 | 45859 | G | A | 38 | 828.77 | intron | Transition | 0/1 | Unannotated |