| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_19 | 127863 | C | T | 40 | 31.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_19 | 136040 | T | C | 72 | 89.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_19 | 190153 | C | T | 37 | 296.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_19 | 203899 | T | C | 58 | 36.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_19 | 288736 | G | A | 107 | 914.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_19 | 697880 | C | T | 44 | 274.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_19 | 834827 | G | A | 154 | 824.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_19 | 857471 | C | T | 15 | 64.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_19 | 1300231 | A | G | 104 | 169.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_19 | 1538447 | A | G | 43 | 120.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_19 | 1730202 | T | C | 15 | 40.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_19 | 1817769 | G | A | 10 | 79.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_19 | 1898937 | G | A | 17 | 194.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_19 | 1924267 | A | G | 11 | 67.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_19 | 1924284 | T | C | 14 | 94.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_20 | 80805 | G | A | 11 | 84.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_20 | 151653 | C | T | 126 | 844.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_20 | 165429 | C | T | 26 | 253.77 | exon | Transition | 0/1 | Pentatricopeptide repeat-containing protein At4g15720 |
| Scaffold_20 | 165430 | T | C | 23 | 152.77 | exon | Transition | 0/1 | Pentatricopeptide repeat-containing protein At4g15720 |
| Scaffold_20 | 436503 | G | A | 12 | 123.77 | noncoding | Transition | 0/1 | Unannotated |