| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_20 | 916688 | T | C | 11 | 103.85 | intron | Transition | 0/1 | Unannotated |
| Scaffold_20 | 1447294 | T | C | 13 | 46.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_20 | 1560798 | A | G | 12 | 103.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_20 | 1699305 | C | T | 11 | 191.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_20 | 1892090 | G | A | 32 | 49.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_20 | 2155939 | A | G | 10 | 96.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_20 | 2198783 | T | C | 21 | 69.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_21 | 114696 | A | G | 12 | 32.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_21 | 119173 | T | C | 11 | 52.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_21 | 127582 | A | G | 26 | 40.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_21 | 127585 | A | G | 24 | 319.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_21 | 142439 | A | G | 160 | 1279.77 | exon | Transition | 0/1 | Calmodulin (CaM) |
| Scaffold_21 | 183770 | C | T | 20 | 138.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_21 | 229375 | T | C | 61 | 1433.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_21 | 475619 | A | G | 24 | 53.77 | CDS | Transition | 0/1 | GDSL esterase/lipase At5g45670 (EC 3.1.1.-) (Extracellular lipase At5g45670) |
| Scaffold_21 | 531438 | T | C | 19 | 176.9 | exon | Transition | 0/1 | Unannotated |
| Scaffold_21 | 1345548 | C | T | 250 | 210.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_21 | 1454936 | C | T | 37 | 309.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_21 | 1518352 | T | C | 11 | 218.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_21 | 1564126 | T | C | 49 | 74.77 | exon | Transition | 0/1 | Unannotated |