| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_24 | 613871 | G | A | 24 | 35.77 | CDS | Transition | 0/1 | Phosphoinositide phospholipase C 6 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC6) (AtPLC6) (AtPLC8) (PI-PLC6) |
| Scaffold_24 | 827020 | A | G | 13 | 278.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_24 | 1010646 | G | A | 33 | 569.77 | intron | Transition | 0/1 | 60S ribosomal protein L5 |
| Scaffold_24 | 1010647 | T | C | 32 | 582.77 | intron | Transition | 0/1 | 60S ribosomal protein L5 |
| Scaffold_24 | 1017595 | A | G | 11 | 204.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_24 | 1155647 | G | A | 21 | 57.77 | intron | Transition | 0/1 | Uroporphyrinogen decarboxylase 1, chloroplastic (UPD1) (URO-D1) (EC 4.1.1.37) |
| Scaffold_24 | 1162004 | A | G | 22 | 116.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_24 | 1300858 | T | C | 49 | 41.77 | CDS | Transition | 0/1 | Vacuolar-sorting receptor 1 (80 kDa proaleurein-binding protein) (BP-80) |
| Scaffold_24 | 1653065 | A | G | 51 | 800.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_24 | 1684117 | G | A | 16 | 35.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_24 | 1836491 | C | T | 12 | 117.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_24 | 1934489 | T | C | 250 | 2527.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_24 | 1934524 | T | C | 250 | 302.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_24 | 1934806 | T | C | 245 | 1984.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_24 | 1934809 | G | A | 237 | 610.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_24 | 1934924 | T | C | 60 | 664.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_24 | 1934988 | T | C | 97 | 1088.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_24 | 1935076 | G | A | 64 | 591.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_24 | 2039677 | A | G | 245 | 6205.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_24 | 2049218 | T | C | 17 | 87.77 | noncoding | Transition | 0/1 | Unannotated |