| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_27 | 1402364 | A | G | 16 | 32.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1484311 | T | C | 22 | 148.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1570013 | G | A | 250 | 3094.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1692791 | A | G | 95 | 1277.77 | CDS | Transition | 0/1 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 (OsLecRK3) (EC 2.7.11.1) (OsRLCK135) |
| Scaffold_27 | 1735505 | A | G | 248 | 2943.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1808293 | T | C | 222 | 333.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1808309 | A | G | 211 | 192.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1808445 | A | G | 28 | 265.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1808936 | T | C | 245 | 2596.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1809026 | G | A | 250 | 2055.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1809074 | G | A | 250 | 2702.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1809212 | C | T | 164 | 2571.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1809554 | G | A | 73 | 935.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1813319 | C | T | 28 | 100.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1813359 | G | A | 102 | 172.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1813383 | G | A | 116 | 308.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1813641 | G | A | 249 | 2676.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1813693 | C | T | 132 | 2090.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1814454 | G | A | 63 | 319.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_27 | 1814478 | G | A | 54 | 437.77 | CDS | Transition | 0/1 | Unannotated |