| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_28 | 9477 | A | G | 14 | 207.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_28 | 60393 | T | C | 41 | 46.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_28 | 60559 | A | G | 28 | 30.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_28 | 460476 | T | C | 18 | 236.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_28 | 464859 | C | T | 13 | 202.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_28 | 496025 | G | A | 40 | 1021.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_28 | 496463 | A | G | 20 | 409.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_28 | 496634 | G | A | 16 | 348.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_28 | 496636 | G | A | 16 | 356.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_28 | 790620 | C | T | 250 | 1118.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_28 | 835050 | A | G | 11 | 254.74 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_28 | 975222 | T | C | 32 | 73.77 | CDS | Transition | 0/1 | Putative phospholipid-transporting ATPase 9 (AtALA9) (EC 3.6.3.1) (Aminophospholipid flippase 9) |
| Scaffold_28 | 1425896 | G | A | 18 | 351.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_28 | 1455696 | T | C | 16 | 149.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_28 | 1627222 | T | C | 22 | 31.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_28 | 1762945 | C | T | 10 | 198.03 | exon | Transition | 0/1 | Unannotated |
| Scaffold_28 | 1844624 | A | G | 20 | 218.77 | CDS | Transition | 0/1 | Histone deacetylase 8 (EC 3.5.1.98) |
| Scaffold_28 | 1844750 | A | G | 75 | 362.77 | CDS | Transition | 0/1 | Histone deacetylase 8 (EC 3.5.1.98) |
| Scaffold_28 | 1844809 | A | G | 76 | 598.77 | CDS | Transition | 0/1 | Histone deacetylase 8 (EC 3.5.1.98) |
| Scaffold_28 | 1844945 | G | A | 62 | 914.77 | CDS | Transition | 0/1 | Histone deacetylase 8 (EC 3.5.1.98) |