| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_29 | 1199737 | G | A | 81 | 193.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_29 | 1199796 | A | G | 85 | 1427.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_30 | 441828 | T | C | 79 | 1281.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_30 | 532940 | T | C | 14 | 100.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_30 | 673011 | G | A | 64 | 755.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_30 | 693037 | C | T | 14 | 238.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_30 | 865396 | G | A | 32 | 336.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_30 | 942595 | T | C | 250 | 308.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_30 | 942600 | T | C | 242 | 346.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_30 | 1037896 | G | A | 10 | 57.77 | noncoding | Transition | 0/1 | Pentatricopeptide repeat-containing protein At4g18840 |
| Scaffold_30 | 1039213 | T | C | 22 | 51.77 | exon | Transition | 0/1 | Pentatricopeptide repeat-containing protein At2g22410, mitochondrial |
| Scaffold_30 | 1130216 | G | A | 49 | 345.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_30 | 1207949 | C | T | 36 | 833.22 | intron | Transition | 0/1 | Unannotated |
| Scaffold_30 | 1208073 | A | G | 17 | 243.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_30 | 1220788 | G | A | 11 | 39.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_30 | 1232420 | G | A | 23 | 156.77 | CDS | Transition | 0/1 | ATP synthase subunit beta, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit beta) (F-ATPase subunit beta) |
| Scaffold_30 | 1609399 | T | C | 177 | 31.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_30 | 1609414 | C | T | 196 | 76.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_30 | 1613227 | G | A | 122 | 1200.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_30 | 1647138 | A | G | 98 | 154.77 | CDS | Transition | 0/1 | Unannotated |