| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_31 | 1371910 | T | C | 250 | 550.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_31 | 1372262 | T | C | 250 | 114.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_31 | 1380639 | G | A | 38 | 34.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_32 | 67684 | C | T | 17 | 45.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_32 | 109855 | T | C | 250 | 511.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_32 | 200378 | A | G | 30 | 72.77 | CDS | Transition | 0/1 | Palmitoyl-acyl carrier protein thioesterase, chloroplastic (EC 3.1.2.-) (16:0-acyl-carrier protein thioesterase) (16:0-ACP thioesterase) (Acyl-[acyl-carrier-protein] hydrolase) (PATE) |
| Scaffold_32 | 296431 | T | C | 249 | 216.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_32 | 296645 | T | C | 249 | 177.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_32 | 296646 | T | C | 250 | 286.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_32 | 296805 | T | C | 250 | 683.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_32 | 297175 | T | C | 250 | 228.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_32 | 297176 | A | G | 250 | 80.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_32 | 297245 | T | C | 250 | 247.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_32 | 297292 | T | C | 250 | 83.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_32 | 297474 | C | T | 20 | 82.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_32 | 297788 | T | A,G | 21 | 643.77 | intron | Transition | 1/2 | Unannotated |
| Scaffold_32 | 298168 | G | A | 172 | 3922.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_32 | 298392 | T | C | 250 | 38.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_32 | 298431 | T | C | 250 | 126.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_32 | 298477 | T | C | 250 | 145.77 | CDS | Transition | 0/1 | Unannotated |