| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_32 | 897078 | T | C | 24 | 220.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_32 | 961901 | T | C | 35 | 136.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_32 | 1020299 | T | C | 18 | 67.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_32 | 1055863 | C | T | 47 | 928.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_32 | 1055892 | T | C | 13 | 44.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_32 | 1079528 | T | C | 43 | 30.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_32 | 1248077 | T | C | 52 | 31.77 | CDS | Transition | 0/1 | 26S proteasome regulatory subunit 7 (26S proteasome AAA-ATPase subunit RPT1) (26S proteasome subunit 7) (Regulatory particle triple-A ATPase subunit 1) |
| Scaffold_32 | 1248107 | G | A | 124 | 1392.77 | CDS | Transition | 0/1 | 26S proteasome regulatory subunit 7 (26S proteasome AAA-ATPase subunit RPT1) (26S proteasome subunit 7) (Regulatory particle triple-A ATPase subunit 1) |
| Scaffold_32 | 1248131 | C | T | 144 | 2465.77 | CDS | Transition | 0/1 | 26S proteasome regulatory subunit 7 (26S proteasome AAA-ATPase subunit RPT1) (26S proteasome subunit 7) (Regulatory particle triple-A ATPase subunit 1) |
| Scaffold_32 | 1273670 | C | T | 11 | 66.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_32 | 1276823 | C | T | 240 | 188.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_33 | 20951 | C | T | 199 | 483.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_33 | 26028 | T | C | 10 | 51.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_33 | 26181 | G | A | 132 | 113.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_33 | 211596 | T | C | 18 | 40.77 | CDS | Transition | 0/1 | F-box protein At1g78280 |
| Scaffold_33 | 213714 | A | G | 18 | 324.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_33 | 262804 | G | A | 15 | 121.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_33 | 357876 | A | G | 55 | 75.77 | CDS | Transition | 0/1 | Acyl-coenzyme A oxidase 2, peroxisomal (AOX 2) (EC 1.3.3.6) (Long-chain acyl-CoA oxidase) (AtCX2) |
| Scaffold_33 | 401630 | G | A | 245 | 287.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_33 | 401636 | C | T | 245 | 1107.77 | CDS | Transition | 0/1 | Unannotated |