| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_38 | 39595 | T | C | 21 | 439.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_38 | 39609 | C | T | 27 | 125.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_38 | 56584 | C | T | 70 | 139.77 | CDS | Transition | 0/1 | CDPK-related kinase 1 (AtCRK1) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 3) (Calmodulin-binding protein kinase 3) (AtCBK3) (CaM-binding protein kinase 3) |
| Scaffold_38 | 56607 | C | T | 72 | 595.77 | CDS | Transition | 0/1 | CDPK-related kinase 1 (AtCRK1) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 3) (Calmodulin-binding protein kinase 3) (AtCBK3) (CaM-binding protein kinase 3) |
| Scaffold_38 | 217062 | T | C | 14 | 64.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_38 | 217063 | T | C | 34 | 73.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_38 | 263485 | A | G | 28 | 100.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_38 | 328679 | A | G | 18 | 64.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_38 | 330500 | T | C | 32 | 48.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_38 | 696981 | T | C | 17 | 30.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_38 | 697253 | A | G | 12 | 94.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_38 | 836819 | A | G | 38 | 30.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_38 | 848867 | C | T | 10 | 274.41 | intron | Transition | 0/1 | Unannotated |
| Scaffold_38 | 855615 | A | G | 18 | 95.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_38 | 886987 | C | T | 17 | 184.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_38 | 887015 | G | A | 46 | 294.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_38 | 887079 | A | G | 142 | 3233.06 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_38 | 969999 | G | A | 11 | 127.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_38 | 970010 | T | C | 10 | 138.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_38 | 1170173 | T | C | 15 | 48.77 | noncoding | Transition | 0/1 | Unannotated |