| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_40 | 39979 | T | C | 84 | 1245.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_40 | 40233 | C | T | 69 | 750.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_40 | 107966 | A | G | 11 | 220.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_40 | 108791 | C | T | 23 | 371.78 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_40 | 122388 | A | G | 210 | 92.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_40 | 206129 | T | C | 60 | 245.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_40 | 206178 | A | G | 151 | 2908.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_40 | 206291 | T | C | 166 | 1503.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_40 | 207302 | A | G | 242 | 849.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_40 | 240185 | A | G | 11 | 191.1 | intron | Transition | 0/1 | Unannotated |
| Scaffold_40 | 316054 | G | A | 157 | 904.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_40 | 431779 | A | G | 28 | 577.77 | CDS | Transition | 0/1 | Probable methyltransferase PMT3 (EC 2.1.1.-) |
| Scaffold_40 | 445726 | T | C | 85 | 132.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_40 | 477247 | G | A | 69 | 35.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_40 | 511938 | T | C | 130 | 325.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_40 | 745359 | T | C | 10 | 53.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_40 | 1255722 | T | C | 39 | 761.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_40 | 1257030 | G | A | 29 | 461.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_40 | 1267211 | T | C | 17 | 49.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_40 | 1267551 | T | C | 18 | 400.53 | noncoding | Transition | 0/1 | Unannotated |