| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_41 | 1096593 | T | C | 58 | 63.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_41 | 1226726 | T | C | 39 | 81.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_41 | 1278950 | T | C | 16 | 337.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_41 | 1497455 | G | A | 250 | 259.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_41 | 1524502 | T | C | 16 | 217.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_41 | 1549633 | C | T | 44 | 61.77 | exon | Transition | 0/1 | Serine/threonine-protein kinase PEPKR2 (EC 2.7.11.-) (Protein PHOSPHOENOLPYRUVATE CARBOXYLASE-RELATED KINASE 2) |
| Scaffold_41 | 1560123 | A | G | 49 | 222.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_41 | 1696070 | C | T | 33 | 125.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_42 | 70962 | T | C | 250 | 195.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_42 | 71532 | C | T | 96 | 1828.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_42 | 165937 | C | T | 10 | 33.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_42 | 168604 | T | C | 18 | 52.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_42 | 198758 | G | A | 21 | 195.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_42 | 229257 | T | C | 66 | 79.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_42 | 630598 | G | A | 250 | 205.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_42 | 630790 | G | A | 34 | 106.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_42 | 632502 | A | G | 250 | 5359.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_42 | 699923 | C | T | 12 | 144.77 | CDS | Transition | 0/1 | Pectinesterase 2.1 (PE 2.1) (EC 3.1.1.11) (Pectin methylesterase 2.1) |
| Scaffold_42 | 700065 | C | T | 34 | 677.77 | CDS | Transition | 0/1 | Pectinesterase 2.1 (PE 2.1) (EC 3.1.1.11) (Pectin methylesterase 2.1) |
| Scaffold_42 | 866700 | T | C | 11 | 47.77 | exon | Transition | 0/1 | Unannotated |