| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_43 | 1693895 | G | A | 16 | 43.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_43 | 1726541 | G | A | 17 | 235.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_43 | 1759108 | T | C | 10 | 86.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_44 | 209243 | T | C | 22 | 76.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_44 | 480597 | A | G | 11 | 52.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_44 | 497655 | T | C | 18 | 158.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_44 | 627657 | A | G | 119 | 93.77 | exon | Transition | 0/1 | Histone H3.2 (Histone H3.1) (Major histone H3) |
| Scaffold_44 | 627789 | A | G | 238 | 2803.77 | exon | Transition | 0/1 | Histone H3.2 (Histone H3.1) (Major histone H3) |
| Scaffold_44 | 627889 | T | C | 244 | 3752.77 | exon | Transition | 0/1 | Histone H3.2 (Histone H3.1) (Major histone H3) |
| Scaffold_44 | 627954 | T | C | 223 | 1110.77 | exon | Transition | 0/1 | Histone H3.2 (Histone H3.1) (Major histone H3) |
| Scaffold_44 | 627960 | C | T | 198 | 802.77 | exon | Transition | 0/1 | Histone H3.2 (Histone H3.1) (Major histone H3) |
| Scaffold_44 | 650028 | G | A | 28 | 351.77 | CDS | Transition | 0/1 | Leucine-rich repeat receptor-like protein kinase TDR (EC 2.7.11.1) (Protein PHLOEM INTERCALATED WITH XYLEM) (Tracheary element differentiation inhibitory factor receptor) (AtTDR) (TDIF receptor) |
| Scaffold_44 | 797185 | C | T | 12 | 36.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_44 | 843683 | T | C | 41 | 56.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_44 | 973006 | C | T | 39 | 315.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_44 | 1099080 | T | C | 49 | 81.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_44 | 1101732 | T | C | 58 | 60.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_44 | 1240717 | T | C | 250 | 7261.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_44 | 1240906 | G | A | 248 | 2285.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_44 | 1240927 | T | C | 192 | 2640.77 | exon | Transition | 0/1 | Unannotated |