| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_47 | 413238 | T | C | 93 | 817.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_47 | 559505 | G | A | 43 | 35.77 | CDS | Transition | 0/1 | Myosin-1 (AtATM1) |
| Scaffold_47 | 1151398 | G | A | 153 | 350.77 | CDS | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1151404 | C | T | 105 | 2110.77 | CDS | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1151477 | T | C | 132 | 119.77 | CDS | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1151557 | G | A | 40 | 456.77 | CDS | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1151563 | G | A | 27 | 61.77 | CDS | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1151596 | G | A | 31 | 264.77 | CDS | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1151809 | A | G | 250 | 4746.77 | CDS | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1151851 | A | G | 222 | 2086.77 | CDS | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1154153 | C | T | 32 | 533.77 | exon | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1478237 | C | T | 20 | 44.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_47 | 1478295 | C | T | 38 | 57.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_47 | 1547273 | G | A | 13 | 49.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_47 | 1720477 | G | A | 44 | 382.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_47 | 1720597 | A | G | 250 | 2250.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_47 | 1720726 | C | T | 24 | 235.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_47 | 1721029 | C | T | 35 | 181.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_47 | 1721215 | A | G | 46 | 514.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_47 | 1721233 | C | T | 20 | 64.77 | intron | Transition | 0/1 | Unannotated |