| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_50 | 264144 | T | C | 250 | 362.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_50 | 264153 | A | G | 248 | 653.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_50 | 264195 | T | C | 248 | 272.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_50 | 507637 | C | T | 35 | 90.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_50 | 694823 | G | A | 14 | 48.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_50 | 696330 | A | G | 15 | 126.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_50 | 933118 | C | T | 70 | 848.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_50 | 1147183 | G | A | 19 | 138.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_50 | 1183341 | C | T | 194 | 1485.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_50 | 1216642 | A | G | 19 | 49.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_50 | 1651744 | G | A | 15 | 107.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_51 | 32621 | T | C | 82 | 46.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_51 | 103113 | G | A | 172 | 1154.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_51 | 109358 | G | A | 34 | 419.77 | noncoding | Transition | 0/1 | Cytochrome P450 709B2 (EC 1.14.-.-) |
| Scaffold_51 | 116244 | G | A | 16 | 234.77 | noncoding | Transition | 0/1 | Cytochrome P450 709B2 (EC 1.14.-.-) |
| Scaffold_51 | 187056 | C | T | 56 | 245.77 | exon | Transition | 0/1 | Autophagy-related protein 18a (AtATG18a) (Protein PEROXISOME UNUSUAL POSITIONING 2) |
| Scaffold_51 | 223564 | A | G | 12 | 232.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_51 | 308625 | A | G | 12 | 76.77 | intron | Transition | 0/1 | Probable LRR receptor-like serine/threonine-protein kinase At1g67720 (EC 2.7.11.1) |
| Scaffold_51 | 368773 | G | A | 47 | 125.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_51 | 373063 | C | T | 46 | 1113.77 | noncoding | Transition | 0/1 | Unannotated |