| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_53 | 1642884 | T | C | 16 | 40.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_53 | 1724600 | A | G | 35 | 54.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_54 | 176612 | G | A | 87 | 61.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_54 | 216419 | A | G | 15 | 43.77 | CDS | Transition | 0/1 | CHD3-type chromatin-remodeling factor PICKLE (EC 3.6.4.-) (Protein CHROMATIN REMODELING 6) (AtCHR6) (Protein GYMNOS) |
| Scaffold_54 | 294681 | G | A | 13 | 328.96 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_54 | 294683 | A | G | 13 | 339.96 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_54 | 298687 | A | G | 14 | 39.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_54 | 300301 | G | A | 27 | 76.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_54 | 549761 | A | G | 13 | 178.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_54 | 550607 | T | C | 81 | 1251.78 | intron | Transition | 0/1 | Unannotated |
| Scaffold_54 | 615647 | C | T | 49 | 351.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_54 | 839467 | T | C | 31 | 176.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_54 | 840096 | C | T | 14 | 127.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_54 | 846919 | A | G | 17 | 108.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_54 | 854065 | T | C | 20 | 169.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_54 | 1020431 | G | A | 93 | 806.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_54 | 1356088 | T | C | 22 | 495.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_54 | 1359678 | C | T | 15 | 115.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_54 | 1368849 | T | C | 11 | 163.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_55 | 30029 | C | T | 151 | 639.77 | exon | Transition | 0/1 | Unannotated |