| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_56 | 1161950 | G | A | 14 | 294.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_56 | 1198950 | G | A | 39 | 50.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_56 | 1216553 | A | G | 75 | 1075.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_57 | 232926 | A | G | 18 | 30.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_57 | 348385 | G | A | 10 | 110.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_57 | 348467 | C | T | 10 | 147.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_57 | 444486 | T | C | 32 | 32.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_57 | 444518 | A | G | 15 | 267.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_57 | 630937 | T | C | 10 | 67.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_57 | 863812 | C | T | 137 | 208.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_57 | 940867 | C | T | 22 | 285.77 | exon | Transition | 0/1 | Probable LRR receptor-like serine/threonine-protein kinase At1g12460 (EC 2.7.11.1) |
| Scaffold_57 | 941008 | G | A | 31 | 697.77 | exon | Transition | 0/1 | Probable LRR receptor-like serine/threonine-protein kinase At1g12460 (EC 2.7.11.1) |
| Scaffold_57 | 941044 | G | A | 28 | 564.77 | exon | Transition | 0/1 | Probable LRR receptor-like serine/threonine-protein kinase At1g12460 (EC 2.7.11.1) |
| Scaffold_57 | 1045858 | T | C | 22 | 38.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_57 | 1339462 | T | C | 15 | 259.77 | CDS | Transition | 0/1 | Beta-galactosidase 1 (Lactase 1) (EC 3.2.1.23) |
| Scaffold_57 | 1389516 | A | G | 89 | 124.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_57 | 1525031 | G | A | 95 | 222.77 | exon | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1525098 | T | C | 87 | 140.77 | exon | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1525171 | T | C | 213 | 1623.77 | exon | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1525284 | C | T | 144 | 2949.77 | exon | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |