| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_59 | 241016 | G | A | 161 | 3767.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_59 | 252803 | C | T | 67 | 676.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_59 | 252804 | G | A | 66 | 913.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_59 | 559315 | A | G | 21 | 56.77 | intron | Transition | 0/1 | Eukaryotic translation initiation factor 6-2 (AteIF-6;2) |
| Scaffold_59 | 593334 | C | T | 32 | 623.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_59 | 824393 | T | C | 13 | 177.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_59 | 933062 | T | C | 250 | 527.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_59 | 933136 | T | C | 250 | 250.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_59 | 933141 | A | G | 250 | 61.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_59 | 933172 | T | C | 250 | 225.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_59 | 933223 | T | C | 250 | 336.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_59 | 933245 | T | C | 250 | 249.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_59 | 933299 | T | C | 250 | 1029.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_59 | 1080312 | T | C | 44 | 860.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_59 | 1301073 | G | A | 15 | 39.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_59 | 1375278 | A | G | 79 | 73.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_59 | 1378739 | A | G | 21 | 299.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_59 | 1427770 | C | T | 37 | 74.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_59 | 1498743 | T | C | 29 | 336.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_59 | 1505152 | A | G | 36 | 157.77 | CDS | Transition | 0/1 | Unannotated |