| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_63 | 119971 | T | C | 12 | 115.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_63 | 120054 | T | C | 19 | 130.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_63 | 120085 | C | T | 23 | 183.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_63 | 270312 | A | G | 19 | 466.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_63 | 277576 | A | G | 31 | 42.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_63 | 322711 | A | G | 57 | 1034.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_63 | 325563 | T | C | 20 | 73.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_63 | 329070 | T | C | 27 | 267.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_63 | 332112 | T | C | 38 | 254.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_63 | 332127 | G | A | 31 | 62.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_63 | 338575 | C | T | 17 | 171.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_63 | 478874 | G | A | 15 | 247.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_63 | 524502 | C | T | 26 | 33.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_63 | 569371 | A | G | 94 | 147.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_63 | 599833 | C | T | 46 | 145.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_63 | 684381 | T | C | 39 | 913.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_63 | 747448 | C | T | 79 | 495.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_63 | 754197 | G | A | 250 | 1142.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_63 | 759624 | G | A | 19 | 243.77 | intron | Transition | 0/1 | Thioredoxin-like protein HCF164, chloroplastic (Protein HIGH CHLOROPHYLL FLUORESCENCE 164) |
| Scaffold_63 | 980355 | C | T | 73 | 68.77 | exon | Transition | 0/1 | Unannotated |