| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_65 | 773146 | C | T | 38 | 36.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_65 | 826689 | C | T | 76 | 108.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_65 | 955848 | A | G | 45 | 44.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_65 | 1113976 | A | G | 13 | 183.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_65 | 1470497 | A | G | 30 | 39.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_66 | 217251 | G | A | 32 | 51.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_66 | 244028 | A | G | 25 | 107.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_66 | 399905 | C | T | 15 | 83.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_66 | 399906 | T | C | 14 | 114.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_66 | 696771 | A | G | 26 | 31.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_66 | 833986 | C | T | 17 | 231.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_66 | 870630 | T | C | 15 | 63.88 | CDS | Transition | 0/1 | Mediator of RNA polymerase II transcription subunit 33B (Protein REDUCED EPIDERMAL FLUORESCENCE 4) (AtREF4) |
| Scaffold_66 | 1010308 | T | C | 17 | 192.84 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_66 | 1039119 | T | C | 19 | 121.77 | CDS | Transition | 0/1 | Membrane-bound transcription factor site-2 protease homolog (EC 3.4.24.-) (Endopeptidase S2P) |
| Scaffold_66 | 1184049 | A | G | 10 | 129.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_66 | 1184050 | G | A | 13 | 237.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_66 | 1321456 | C | T | 37 | 52.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_67 | 168608 | G | A | 68 | 39.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_67 | 372747 | C | T | 97 | 68.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_67 | 576992 | T | C | 11 | 150.77 | intron | Transition | 0/1 | Unannotated |