| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_78 | 34142 | G | A | 24 | 318.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_78 | 34406 | T | C | 17 | 128.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_78 | 52241 | T | C | 10 | 202.8 | exon | Transition | 0/1 | Unannotated |
| Scaffold_78 | 115205 | G | A | 41 | 295.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_78 | 115370 | C | T | 92 | 1338.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_78 | 115405 | T | C | 47 | 51.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_78 | 115673 | C | T | 250 | 5983.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_78 | 161902 | A | G | 40 | 866.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_80 | 6917 | T | C | 48 | 1183.74 | exon | Transition | 0/1 | Unannotated |
| Scaffold_81 | 89358 | C | T | 239 | 5357.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_82 | 143247 | A | G | 77 | 31.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_82 | 143294 | C | T | 250 | 6189.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_82 | 227848 | T | C | 10 | 178.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_82 | 238337 | C | T | 28 | 129.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_82 | 238341 | T | C | 11 | 82.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_83 | 283459 | G | A | 10 | 119.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_83 | 293928 | A | G | 46 | 38.77 | exon | Transition | 0/1 | Probable serine/threonine-protein kinase WNK5 (AtWNK5) (EC 2.7.11.1) (Protein kinase with no lysine 5) |
| Scaffold_84 | 11293 | T | C | 15 | 286.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_84 | 11684 | A | G | 31 | 499.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_85 | 49374 | C | T | 42 | 86.77 | exon | Transition | 0/1 | Unannotated |