| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_94 | 239917 | A | G | 10 | 36.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_94 | 274237 | T | C | 25 | 97.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_94 | 351972 | C | T | 89 | 694.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_94 | 352053 | C | T | 92 | 328.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_95 | 286281 | T | C | 43 | 48.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_96 | 14494 | T | C | 13 | 189.77 | intron | Transition | 0/1 | Peroxisomal membrane protein PEX14 (Peroxin-14) (AtPEX14) (Peroxisome biogenesis protein 14) (Pex14p) (Protein PEROXISOME DEFECTIVE 2) |
| Scaffold_96 | 132900 | T | C | 219 | 539.77 | CDS | Transition | 0/1 | Aldehyde dehydrogenase family 2 member B4, mitochondrial (ALDH2a) (EC 1.2.1.3) |
| Scaffold_96 | 136152 | T | C | 20 | 142.77 | intron | Transition | 0/1 | Aldehyde dehydrogenase family 2 member C4 (EC 1.2.1.3) (ALDH1a) (Protein REDUCED EPIDERMAL FLUORESCENCE 1) |
| Scaffold_96 | 137418 | T | C | 29 | 324.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_96 | 138914 | C | T | 72 | 125.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_96 | 155677 | A | G | 27 | 152.77 | exon | Transition | 0/1 | Pentatricopeptide repeat-containing protein At1g12775, mitochondrial |
| Scaffold_96 | 155693 | A | G | 31 | 499.77 | exon | Transition | 0/1 | Pentatricopeptide repeat-containing protein At1g12775, mitochondrial |
| Scaffold_96 | 155755 | T | C | 32 | 434.77 | exon | Transition | 0/1 | Pentatricopeptide repeat-containing protein At1g12775, mitochondrial |
| Scaffold_96 | 155782 | G | A | 25 | 184.77 | exon | Transition | 0/1 | Pentatricopeptide repeat-containing protein At1g12775, mitochondrial |
| Scaffold_96 | 155837 | G | A | 12 | 70.77 | exon | Transition | 0/1 | Pentatricopeptide repeat-containing protein At1g12775, mitochondrial |
| Scaffold_96 | 156051 | T | C | 43 | 36.77 | exon | Transition | 0/1 | Pentatricopeptide repeat-containing protein At1g12775, mitochondrial |
| Scaffold_96 | 156113 | T | C | 53 | 494.77 | exon | Transition | 0/1 | Pentatricopeptide repeat-containing protein At1g12775, mitochondrial |
| Scaffold_96 | 201275 | C | T | 48 | 54.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_97 | 2526 | T | C | 187 | 839.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_97 | 2536 | T | C | 188 | 2845.77 | exon | Transition | 0/1 | Unannotated |