| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_108 | 89789 | A | G | 83 | 66.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_109 | 174662 | A | G | 12 | 39.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_109 | 217535 | T | C | 10 | 85.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_109 | 500001 | C | T | 12 | 146.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_110 | 175657 | T | C | 16 | 157.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_110 | 429822 | A | G | 69 | 47.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_111 | 281355 | T | A,G | 38 | 1407.77 | noncoding | Transition | 1/2 | Unannotated |
| Scaffold_111 | 293102 | T | C | 115 | 2026.77 | CDS | Transition | 0/1 | Serine decarboxylase (AtSDC) (EC 4.1.1.-) (Protein EMBRYO DEFECTIVE 1075) (Serine decarboxylase 1) (AtSDC1) |
| Scaffold_112 | 76485 | C | T | 22 | 148.77 | noncoding | Transition | 0/1 | Mannan endo-1,4-beta-mannosidase 3 (EC 3.2.1.78) (Beta-mannanase 3) (Endo-beta-1,4-mannanase 3) (AtMAN3) |
| Scaffold_112 | 86691 | T | C | 10 | 170.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_112 | 173922 | T | C | 28 | 34.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_112 | 174023 | T | C | 57 | 234.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_112 | 174120 | A | G | 54 | 669.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_112 | 174212 | G | A | 76 | 251.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_112 | 176004 | C | T | 33 | 393.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_112 | 176048 | G | A | 53 | 160.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_112 | 176496 | T | C | 50 | 114.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_112 | 176503 | A | G | 62 | 389.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_112 | 176554 | C | T | 58 | 893.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_112 | 176565 | A | G | 64 | 1019.77 | CDS | Transition | 0/1 | Unannotated |