| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_112 | 176629 | G | A | 89 | 779.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_112 | 177929 | C | T | 45 | 99.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_112 | 177933 | G | A | 47 | 109.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_112 | 178102 | C | T | 56 | 467.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_112 | 211961 | A | G | 19 | 31.77 | CDS | Transition | 0/1 | Protein ILITYHIA |
| Scaffold_112 | 268392 | G | A | 91 | 1968.56 | CDS | Transition | 0/1 | Probable protein phosphatase 2C 6 (AtPP2C06) (EC 3.1.3.16) |
| Scaffold_112 | 269008 | G | A | 14 | 72.77 | intron | Transition | 0/1 | Probable protein phosphatase 2C 18 (AtPP2C18) (EC 3.1.3.16) |
| Scaffold_112 | 406564 | A | G | 11 | 55.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_113 | 15884 | G | A | 10 | 221.28 | intron | Transition | 0/1 | Probable serine/threonine protein kinase IRE (EC 2.7.11.1) (Protein INCOMPLETE ROOT HAIR ELONGATION) (AtIRE) |
| Scaffold_113 | 268442 | C | T | 81 | 169.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_113 | 320811 | G | A | 31 | 62.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_113 | 460774 | A | G | 27 | 42.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_114 | 38928 | A | G | 45 | 538.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_114 | 380082 | T | C | 15 | 242.77 | intron | Transition | 0/1 | Isocitrate dehydrogenase [NADP] (IDH) (EC 1.1.1.42) (IDP) (NADP(+)-specific ICDH) (Oxalosuccinate decarboxylase) |
| Scaffold_114 | 381461 | T | C | 45 | 904.77 | exon | Transition | 0/1 | Isocitrate dehydrogenase [NADP] (IDH) (EC 1.1.1.42) (IDP) (NADP(+)-specific ICDH) (Oxalosuccinate decarboxylase) |
| Scaffold_114 | 381463 | G | A | 50 | 1185.77 | exon | Transition | 0/1 | Isocitrate dehydrogenase [NADP] (IDH) (EC 1.1.1.42) (IDP) (NADP(+)-specific ICDH) (Oxalosuccinate decarboxylase) |
| Scaffold_114 | 381560 | A | G | 20 | 179.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_114 | 401773 | T | C | 50 | 176.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_114 | 411195 | C | T | 33 | 117.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_115 | 57489 | A | G | 10 | 181.9 | intron | Transition | 0/1 | Unannotated |