| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_142 | 207482 | A | G | 63 | 73.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_142 | 207737 | T | C | 249 | 3187.75 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_142 | 207767 | G | A | 216 | 2302.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_142 | 207782 | A | G | 177 | 1431.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_142 | 207973 | G | A | 39 | 228.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_142 | 207982 | G | A | 32 | 199.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_142 | 227624 | T | A,C | 12 | 1173.77 | intron | Transition | 1/2 | Unannotated |
| Scaffold_142 | 528946 | T | C | 34 | 41.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_143 | 170745 | C | T | 250 | 175.77 | exon | Transition | 0/1 | Photosynthetic NDH subunit of subcomplex B 2, chloroplastic (Protein PnsB2) (NAD(P)H DEHYDROGENASE SUBUNIT 45) (NDH-DEPENDENT CYCLIC ELECTRON FLOW 2) |
| Scaffold_143 | 319732 | G | A | 53 | 69.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_144 | 274509 | T | C | 10 | 189.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_144 | 387798 | G | A | 22 | 379.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_144 | 393274 | G | A | 28 | 184.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_144 | 459169 | A | G | 52 | 65.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_145 | 67351 | T | C | 44 | 218.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_145 | 99668 | T | C | 25 | 227.77 | CDS | Transition | 0/1 | Pentatricopeptide repeat-containing protein At4g02750 |
| Scaffold_145 | 404406 | C | T | 238 | 95.77 | exon | Transition | 0/1 | Probable mediator of RNA polymerase II transcription subunit 37e (Heat shock 70 kDa protein 1) (Heat shock cognate 70 kDa protein 1) (Heat shock cognate protein 70-1) (AtHsc70-1) (Heat shock protein 70-1) (AtHsp70-1) (Protein EARLY-RESPONSIVE TO DEHYDRATI |
| Scaffold_145 | 404439 | T | C | 160 | 438.77 | exon | Transition | 0/1 | Probable mediator of RNA polymerase II transcription subunit 37e (Heat shock 70 kDa protein 1) (Heat shock cognate 70 kDa protein 1) (Heat shock cognate protein 70-1) (AtHsc70-1) (Heat shock protein 70-1) (AtHsp70-1) (Protein EARLY-RESPONSIVE TO DEHYDRATI |
| Scaffold_145 | 411240 | T | C | 19 | 421.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_145 | 411264 | T | C | 13 | 240.77 | exon | Transition | 0/1 | Unannotated |