| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_163 | 219997 | G | A | 16 | 166.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_163 | 220652 | T | C | 76 | 174.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_163 | 220683 | C | T | 92 | 369.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_163 | 308146 | G | A | 10 | 77.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_163 | 384068 | G | A | 11 | 272.77 | intron | Transition | 0/1 | Metal tolerance protein A2 (AtMTP3) (AtMTPa2) |
| Scaffold_163 | 421914 | A | G | 34 | 157.77 | exon | Transition | 0/1 | Nuclear intron maturase 3, mitochondrial (AtnMat3) (EC 3.1.-.-) (Nuclear intron maturase 2 a) (AtnMat2a) |
| Scaffold_163 | 433700 | T | C | 63 | 33.77 | CDS | Transition | 0/1 | Probable methyltransferase PMT6 (EC 2.1.1.-) |
| Scaffold_164 | 165365 | T | C | 14 | 289.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_164 | 200352 | C | T | 28 | 406.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_164 | 202304 | G | A | 249 | 2422.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_164 | 202563 | A | G | 250 | 545.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_164 | 202581 | C | T | 250 | 1698.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_164 | 202677 | G | A | 250 | 2512.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_164 | 202821 | C | T | 228 | 3678.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_164 | 202835 | C | T | 201 | 2216.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_164 | 304569 | T | C | 44 | 31.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_164 | 304592 | C | T | 82 | 75.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_164 | 445693 | G | A | 89 | 187.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_165 | 18666 | A | G | 35 | 121.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_165 | 35185 | C | T | 27 | 155.77 | exon | Transition | 0/1 | Unannotated |