| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_165 | 557253 | G | A | 129 | 119.77 | CDS | Transition | 0/1 | N-terminal acetyltransferase A complex auxiliary subunit NAA15 (AtNAA15) (Protein OMISHA) |
| Scaffold_165 | 651998 | A | G | 22 | 600.89 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_165 | 652036 | T | C | 32 | 682.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_166 | 149341 | T | C | 15 | 194.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_166 | 229331 | G | A | 16 | 146.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_167 | 37216 | T | C | 24 | 184.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_167 | 86046 | C | T | 12 | 175.77 | CDS | Transition | 0/1 | Actin |
| Scaffold_167 | 86085 | T | C | 11 | 208.77 | CDS | Transition | 0/1 | Actin |
| Scaffold_167 | 185232 | C | T | 14 | 90.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_167 | 185266 | C | T | 14 | 89.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_167 | 522151 | T | C | 250 | 44.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_167 | 540646 | C | T | 28 | 212.77 | CDS | Transition | 0/1 | Polygalacturonase 1 beta-like protein 3 (AtPGL3) (Aromatic-rich glycoprotein JP650) (PG1beta-like protein 3) (Polygalacturonase 2) (Probable polygalacturonase non-catalytic subunit JP650) |
| Scaffold_167 | 542706 | T | C | 29 | 433.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_167 | 570722 | T | C | 250 | 175.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_167 | 570741 | T | C | 250 | 698.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_167 | 570806 | T | C | 250 | 487.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_167 | 570971 | T | C | 250 | 40.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_167 | 570972 | T | C | 250 | 362.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_167 | 571193 | T | C | 30 | 83.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_167 | 623298 | G | A | 15 | 78.77 | noncoding | Transition | 0/1 | Unannotated |