| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_178 | 581481 | G | A | 60 | 809.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_178 | 581902 | C | T | 57 | 516.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_180 | 90129 | C | T | 12 | 57.77 | CDS | Transition | 0/1 | Ammonium transporter 3 member 1 (OsAMT3;1) |
| Scaffold_180 | 135002 | C | T | 24 | 255.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_181 | 68573 | G | A | 11 | 40.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_181 | 68964 | G | A | 29 | 43.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_181 | 119918 | C | T | 121 | 2499.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_181 | 120281 | T | C | 93 | 221.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_181 | 425642 | A | G | 56 | 537.77 | CDS | Transition | 0/1 | Calcium-dependent protein kinase 1 (OsCDPK1) (OsCPK1) (EC 2.7.11.1) |
| Scaffold_181 | 584575 | G | A | 10 | 49.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_181 | 584702 | G | A | 11 | 116.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_181 | 584934 | C | T | 13 | 98.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_181 | 621210 | A | G | 17 | 76.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_181 | 850028 | G | A | 57 | 656.77 | CDS | Transition | 0/1 | DNA-directed RNA polymerase II subunit 2 (DNA-directed RNA polymerase II 135 kDa polypeptide) (DNA-directed RNA polymerase II subunit RPB2) (RNA polymerase II subunit 2) (RNA polymerase II subunit B2) (EC 2.7.7.6) (Protein EMBRYO DEFECTIVE 1989) |
| Scaffold_181 | 856925 | G | A | 221 | 1894.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_181 | 883713 | C | T | 11 | 127.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_188 | 17120 | A | G | 29 | 373.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_188 | 17121 | C | T | 29 | 542.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_190 | 3190 | T | C | 24 | 215.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_191 | 11946 | C | T | 46 | 149.77 | CDS | Transition | 0/1 | Unannotated |