| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_296 | 24784 | G | A | 157 | 3302.77 | exon | Transition | 0/1 | BTB/POZ domain-containing protein At2g30600 |
| Scaffold_296 | 24787 | C | T | 168 | 3641.77 | exon | Transition | 0/1 | BTB/POZ domain-containing protein At2g30600 |
| Scaffold_296 | 24985 | T | C | 159 | 712.77 | exon | Transition | 0/1 | BTB/POZ domain-containing protein At2g30600 |
| Scaffold_296 | 25054 | T | C | 140 | 399.77 | exon | Transition | 0/1 | BTB/POZ domain-containing protein At2g30600 |
| Scaffold_296 | 25072 | T | C | 155 | 610.77 | exon | Transition | 0/1 | BTB/POZ domain-containing protein At2g30600 |
| Scaffold_296 | 25318 | T | C | 129 | 2517.77 | exon | Transition | 0/1 | BTB/POZ domain-containing protein At2g30600 |
| Scaffold_297 | 32566 | C | T | 18 | 435.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_297 | 54049 | A | G | 46 | 242.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_297 | 54078 | T | C | 77 | 377.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_297 | 54106 | C | T | 111 | 1890.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_297 | 54256 | C | T | 121 | 1908.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_297 | 54271 | G | A | 90 | 1239.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_297 | 54363 | T | C | 55 | 407.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_297 | 54375 | T | C | 76 | 1073.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_297 | 54493 | A | G | 186 | 1390.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_297 | 54573 | A | G | 104 | 1561.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_299 | 3060 | A | G | 69 | 66.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_299 | 3210 | A | G | 249 | 2439.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_299 | 3281 | A | G | 102 | 291.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_314 | 65955 | T | C | 49 | 72.77 | exon | Transition | 0/1 | Unannotated |