| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_325 | 27425 | T | C | 250 | 119.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_325 | 76949 | T | C | 35 | 395.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_327 | 7427 | T | C | 27 | 728.89 | exon | Transition | 0/1 | Unannotated |
| Scaffold_329 | 28179 | T | C | 20 | 322.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_332 | 9493 | T | C | 23 | 56.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_335 | 43256 | T | C | 249 | 3695.77 | noncoding | Transition | 0/1 | Cellulose synthase A catalytic subunit 1 [UDP-forming] (AtCesA1) (EC 2.4.1.12) (Protein RADIALLY SWOLLEN 1) (AtRSW1) |
| Scaffold_335 | 43259 | G | A | 247 | 4033.77 | noncoding | Transition | 0/1 | Cellulose synthase A catalytic subunit 1 [UDP-forming] (AtCesA1) (EC 2.4.1.12) (Protein RADIALLY SWOLLEN 1) (AtRSW1) |
| Scaffold_335 | 43286 | C | T | 245 | 276.77 | noncoding | Transition | 0/1 | Cellulose synthase A catalytic subunit 1 [UDP-forming] (AtCesA1) (EC 2.4.1.12) (Protein RADIALLY SWOLLEN 1) (AtRSW1) |
| Scaffold_335 | 52393 | C | T | 62 | 292.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_335 | 52514 | T | C | 16 | 182.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_335 | 52561 | A | G | 32 | 641.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_335 | 52575 | A | G | 32 | 158.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_335 | 52581 | T | C | 29 | 61.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_335 | 52791 | C | T | 40 | 604.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_335 | 52822 | C | T | 37 | 66.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_336 | 31457 | G | A | 54 | 171.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_337 | 5284 | T | C | 12 | 122.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_337 | 5415 | C | T | 19 | 344.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_338 | 52462 | G | A | 60 | 143.77 | intron | Transition | 0/1 | Probable zinc metalloprotease EGY2, chloroplastic (EC 3.4.24.-) (Protein ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 2) |
| Scaffold_338 | 53854 | C | T | 103 | 155.77 | intron | Transition | 0/1 | Unannotated |